PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000448.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 1227aa    MW: 135113 Da    PI: 8.4684
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000448.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.41.1e-1868161190
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                  ++Y+++A++ GF vr+++sk + ++   ++kr++vC + g++ + k+ + k++r+++ +r++C+a++++kk+      kw+v+++++ HnH+l 
  Aco000448.1  68 EYYSNFARNNGFLVRRERSKGNpEHPMGVYKRELVCHRAGSPLSVKSPEAKRQRKKKPSRCKCDAQMVIKKNVlsgATKWVVISFSNLHNHDLL 161
                  69*****************999767777*****************999999999*****************9998889*************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1568161IPR004330FAR1 DNA binding domain
SuperFamilySSF527432.75E-69531568IPR000209Peptidase S8/S53 domain
PfamPF059221.2E-7552630IPR010259Peptidase S8 propeptide/proteinase inhibitor I9
SuperFamilySSF527432.75E-69595830IPR000209Peptidase S8/S53 domain
Gene3DG3DSA:3.40.50.2001.0E-69606830IPR000209Peptidase S8/S53 domain
CDDcd048528.72E-1016291080No hitNo description
PfamPF000822.0E-436561081IPR000209Peptidase S8/S53 domain
PRINTSPR007231.3E-19656675IPR015500Peptidase S8, subtilisin-related
PROSITE patternPS001360661672IPR023827Peptidase S8, subtilisin, Asp-active site
PRINTSPR007231.3E-19719732IPR015500Peptidase S8, subtilisin-related
PROSITE patternPS001370723733IPR022398Peptidase S8, subtilisin, His-active site
CDDcd021205.76E-18856985No hitNo description
PfamPF022251.4E-6901967IPR003137PA domain
Gene3DG3DSA:3.40.50.2001.0E-699631099IPR000209Peptidase S8/S53 domain
SuperFamilySSF527432.75E-699871135IPR000209Peptidase S8/S53 domain
PRINTSPR007231.3E-1910431059IPR015500Peptidase S8, subtilisin-related
PROSITE patternPS00138010441054IPR023828Peptidase S8, subtilisin, Ser-active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0004252Molecular Functionserine-type endopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1227 aa     Download sequence    Send to blast
MRKHRCPCGD EQCYIEPEGF EEEELVEQVG VMEPNFDLGS PKLSLNSNKV AAPPYVGQSF  60
QSDEEALEYY SNFARNNGFL VRRERSKGNP EHPMGVYKRE LVCHRAGSPL SVKSPEAKRQ  120
RKKKPSRCKC DAQMVIKKNV LSGATKWVVI SFSNLHNHDL LDINDVHYSP GYRYISQADR  180
ERILALVKGG CNANLIIRAL EMEKGIKPGQ LTFGERDLKN FLNASMSINP ENEGLELLKA  240
CKVMKERNPD FRYEFTYDES NKLEHIAWSY VGSIQAYKIF GDVDFELHWE QMVIEFGLGS  300
DRHISLLFIH RSCWALPYLR IDFQNQAGEE AATQQSQESL KIKTCLPLEE HASTILTKYA  360
FEMFQKEMMF STHYAVYETS RESYLVRHHL KSDGGHIKYL IPRWRRESSL YPKSSGHKYR  420
SQALRDRFDY VQWHLSRLLD HVRDMSAADE SNGSDLEPST SFDARVDVVP ARSVTRGRPR  480
KLKGMARPTR SLSSSSAFLS ITIVRSRAKM KTRQRLVLLT AFSSLLPIVT IVHAQLLPIV  540
NEPNADSNEL QTYIVHVDEP LGADSLGEDE LRSYHESFLP TPTLDSGAPR LIYSYRDVMS  600
GFAPWLTPAE VGAMESKPGF VHARLDQVYP LLTTYTPRFL GLTQNLSAAW AGAGFGQGIV  660
IGILDSGIHR THPSFSDAGM PPPPPNWQGN CSLASGVRCN NKIIAARGFN ASADAPALDT  720
NGHGTHVASI AAGSSVNNSS VLGQAFGNAT GMAPRAHLAI YKVCFKGCAY SDTLAAIDQA  780
IYDGVNIISM SIGGNATYRY YYDGIAQGSL AALSHGIITV AAAGNEGPEE NTLAHDAPLV  840
LIWAQTSTDR RCRAIVKLGN GEELEGETAY QLSSFDQSRM LPIVYPGAIV WKNASVCLKG  900
SLDHIDVRQK IVLCHLSNNT NVEKGAVVCA AGGAAMVLLN PQSLGFTTFA DVHVLPAVHL  960
SYSGGLNILA YYDKLRNSTG VSTATASIIF QKTTFSSRGP PPSNGGILKP DVLAPGVNIL  1020
AAWPFAVGPN PSALVTSTFI FASGTSMATP HVSGIAALIK NKHPTWPPAF INSAIITRAS  1080
IFATGAGQID PMRALDPGLV YDIQPDDYTG YLCALRYTDS ELKKLYHKLV NCSAMRWIQA  1140
SAMNYPSIQP NGKKRRGSDT PQIGPSRWVR VDLSTSQLRF SRLDQEESFN VTLTVTRSPS  1200
SKYAAGWIKW VSGTFVVKTP IAVKFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3vta_A4e-92659122324617Cucumisin
3vta_B4e-92659122324617Cucumisin
4yn3_A4e-92659122324617Cucumisin
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6667090.0KM666709.1 Ananas bracteatus clone 52070 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787169.10.0PREDICTED: subtilisin-like protease SDD1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-65FAR1-related sequence 10